Front Page Forums BioMap Error about import imzML file

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  • #1598
    koala
    Participant

    When I import an imzML file, the error occur. Does anyone know how to solve this?Thanks!

    #1600
    koala
    Participant

    sorry [img size=478]http://www.maldi-msi.org/images/fbfiles/images/error-7f743fb16fcef2a9dc6af0d5cdd133cb.jpg[/img]

    #1601
    Markus Stoeckli
    Moderator

    This seems to be an issue with the file you try to open. If you created this yourself, check the headers for correct dimensions.

    Markus

    #1604
    koala
    Participant

    Hi!
    Thanks for your reply!
    I tried to import the file on a desktop PC, it’s OK.
    Later I installed BioMap on my laptop, it didn’t work and error.
    I reinstalled BioMap several times, just the same.

    #1605
    koala
    Participant

    my file [file name=Imaging0406_04.zip size=32589]http://www.maldi.ms/images/fbfiles/files/Imaging0406_04.zip[/file]

    Attachments:
    #1606
    koala
    Participant

    another one [file name=Imaging0405_03.zip size=49995]http://www.maldi.ms/images/fbfiles/files/Imaging0405_03.zip[/file]

    Attachments:
    #1607
    Markus Stoeckli
    Moderator

    The files you attached are not the full data set. You need to copy also the binary files to the same directory in order to open them.

    Markus

    #1608
    koala
    Participant

    OK.I will try to copy all raw data together.
    Thanks!

    #1609
    koala
    Participant

    MALDI Solution software export two kind files: imzML and ibd.
    I put them together in the same directory, not work.
    The ibd file is too big. Sorry I can’t upload it.

    #1610
    Markus Stoeckli
    Moderator

    Please let me summarize what I read from your posts: You can open imzML files with BioMap on one computer, but when you transfer them to another one they fail to open? Deducting from this I assume that the file format is correct. It is important to keep the xml and binary files together – see also the information in [url=http://www.imzml.org/index.php?option=com_content&view=article&id=191&Itemid=65]this link[/url].

    You might try to copy the files to a simple path, e.g. C:Temp to check if it is an issue with a special character in the path name.

    Markus

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