Achievements

On this page you can access an overview of our past activities (including trainings and workshops).

 

Publications

Mass spectrometric imaging of in vivo protein and lipid adsorption on biodegradable vascular replacement systems.
Sophie M. Fröhlich, Magdalena Eilenberg, Anastasiya Svirkova, Christian Grasl, Robert Liska, Helga Bergmeister and Martina Marchetti-Deschmann
Analyst. 2015 Sep 7;140(17):6089-99.

Fabry disease: renal sphingolipid distribution in the α-Gal A knockout mouse model by mass spectrometric and immunohistochemical imaging.
Ladislav Kuchar, Helena Faltyskova, Lukas Krasny, Robert Dobrovolny, Helena Hulkova, Jana Ledvinova, Michael Volny, Martin Strohalm, Karel Lemr, Lenka Kryspinov1, Befekadu Asfaw, Jitka Rybová, Robert J. Desnick and Vladimir Havlicek
Anal Bioanal Chem. 2015 Mar; 407(8):2283-91. Epub 2014 Dec 27.

A MALDI-Mass Spectrometry Imaging method applicable to different formalin-fixed paraffin-embedded human tissues.
Gabriele De Sio, Andrew James Smith, Manuel Galli, Mattia Garancini, Clizia Chinello, Francesca Bono, Fabio Pagni and Fulvio Magni
Mol Biosyst. 2015 May 19;11(6):1507-14 Epub 2015 Jan 6.

MALDI-imaging mass spectrometry on tissues.
Veronica Mainini, Maciej Lalowski, Athanasios Gotsopoulos, Vasiliki Bitsika, Marc Baumann and Fulvio Magni
Methods Mol Biol. 2015; 1243:139-64

Imaging and identification of endogenous peptides from rat pituitary embedded in egg yolk.
Piotr Sosnowski, Tymoteusz Zera, Beata Wilenska, Ewa Szczepanska-Sadowska and Aleksandra Misicka
Rapid Communications in Mass Spectrometry (2015),  29 (4), 327–335.

Discussion point: reporting guidelines for mass spectrometry imaging.
Liam A. McDonnell, Andreas Römpp, Benjamin Balluff, Ron M. A. Heeren, Juan Pablo Albar, Per E. Andrén, Garry L. Corthals, Axel Walch and Markus Stoeckli
Anal Bioanal Chem. 2015 Mar;407(8):2035-45.

 

Spatial Segmentation of MALDI FT-ICR MSI Data: A Powerful Tool to Explore the Head and Neck Tumor In Situ Lipidome.
Lukas Krasny, Franziska Hoffmann, Günther Ernst, Dennis Trede, Theodore Alexandrov, Vladimir Havlicek, Orlando Guntinas-Lichius, Ferdinand von Eggeling and Anna C. Crecelius
J Am Soc Mass Spectrom. 2015 Jan; 26(1):36-43. Epub 2014 Nov 6.

Evaluation of Sparfloxacin Distribution by Mass Spectrometry Imaging in a Phototoxicity Model.
Stéphanie Marie Boudon, Grégory Morandi, Brendan Prideaux, Dieter Staab, Ursula Junker, Alex Odermatt, Markus Stoeckli and Daniel Bauer
J Am Soc Mass Spectrom. 2014 Oct;25(10):1803-9. Epub 2014 Jul 8.

Maldi-tof mass spectrometry imaging reveals molecular level changes in ultrahigh molecular weight polyethylene joint implants in correlation with lipid adsorption.
Sophie M. Fröhlich, Vasiliki-Maria Archodoulaki, Günter Allmaier, and Martina Marchetti-Deschmann
Anal Chem. 2014 Oct 7;86(19):9723-32. Epub 2014 Sep 25.

Synovial fluid protein adsorption on polymer-based artificial hip joint material investigated by MALDI-TOF mass spectrometry imaging
Sophie M. Fröhlich, Victoria Dorrer, Vasiliki-Maria Archodoulaki, Günter Allmaier and Martina Marchetti-Deschmann
EuPA Open Proteomics, Volume 4, September 2014, Pages 70–80.

30μm spatial resolution protein MALDI MSI: In-depth comparison of five sample preparation protocols applied to human healthy and atherosclerotic arteries.
Marta Martin-Lorenzo, Benjamin Balluff, Aroa Sanz-Maroto, René J.M. van Zeijl, Fernando Vivanco, Gloria Alvarez-Llamas and Liam A. McDonnell.
J Proteomics. 2014 Aug 28;108:465-8. Epub 2014 Jun 25.

Proteomics for the diagnosis of thyroid lesions: preliminary report.
F. Pagni, V. Mainini, M. Garancini, F. Bono, A. Vanzati, V. Giardini, M. Scardilli, P. Goffredo, A. J. Smith, M. Galli, G. De Sio, F. Magni
Cytopathology. 2015 Oct;26(5):318-24. Epub 2014 Jul 20.

iMatrixSpray: a free and open source sample preparation device for mass spectrometric imaging.
Markus Stoeckli, Dieter Staab, Michael Wetzel and Matthias Brechbuehl
Chimia (Aarau). March 2014;68(3):146-9.

MSiMass List: A Public Database of Identifications for Protein MALDI MS Imaging.
Liam A. McDonnell, Axel Walch, Markus Stoeckli and Garry L. Corthals
J Proteome Res. 2014 Feb 7;13(2):1138-42.

An Alternative Approach in Endocrine Pathology Research: MALDI-IMS in Papillary Thyroid Carcinoma
Veronica Mainini, Fabio Pagni , Mattia Garancini, Vittorio Giardini, Gabriele De Sio, Carlo Cusi, Cristina Arosio, Gaia Roversi, Clizia Chinello, Paola Caria, Roberta Vanni and Fulvio Magni.
Endocrine pathology. 2013 Dec;24(4):250-3.

MALDI imaging mass spectrometry in glomerulonephritis: feasibility study.
Veronica Mainini, Fabio Pagni, Franco Ferrario, Federico Pieruzzi, Marco Grasso, Andrea Stella, Giorgio Cattoretti and Fulvio Magni
Histopathology. 2013 Nov 27.

Imaging mass spectrometry: a new tool for kidney disease investigations
Maciej Lalowski, Fulvio Magni, Veronica Mainini, Evanthia Monogioudi, Athanasios Gotsopoulos, Rabah Soliymani, Clizia Chinello and Marc Baumann
Nephrol Dial Transplant. 2013 Jul;28(7):1648-56.

Detection of high molecular weight proteins by MALDI imaging mass spectrometry.
Veronica Mainini, Giorgio Bovo, Clizia Chinello, Erica Gianazza, Marco Grasso, Giorgio Cattoretti and Fulvio Magni
Molecular Biosystems. 2013 Jun;9(6):1101-7.

Proteomics imaging and the kidney
Fulvio Magni, Maciej Lalowski, Veronica Mainini, Martina Marchetti-Deschmann, Clizia Chinello, Andrea Urbani and Marc Baumann
Journal of Nephrology. 2013 May-Jun;26(3):430-436.

Going forward: Increasing the accessibility of imaging mass spectrometry.
Liam A. McDonnell, Ron M.A. Heeren, Per E. Andrén, Markus Stoeckli and Garry L. Corthals
J Proteomics. 2012 Aug 30;75(16):5113-21.

 

Short Term Scientific Missions (Exchange visits)

So far 29 STSMs have taken place.

Participation of different countries in STSMs:


STSM-2012

2012
1. Vasiliki Bitsika from Athens to Helsinki
2. Martina Marchetti-Deschmann from Vienna to Amsterdam/ Leiden
3. Diego Cobice from Edinburgh to Amsterdam
4. Marta Martin Lorenzo from Madrid to Leiden
5. Florian Marty from Zurich to Amsterdam
6. Karolina Skraskova from Prague to Basel
7. Ricardo Carreira from Leiden To Uppsala
8. Rima Ait Belkacem from Marseille to Uppsala
9. Tiffany Porter from Geneva to Amsterdam
10. Veronica Mainini from Milan to Stevenage

STSM-2013

2013
1. Tim Dekker from Leiden to Munich
2. Joanna Cappell from Glasgow to Amsterdam
3. Na Sun from Munich to Leiden
4. Bram Heijs from Leiden to Sheffield
5. Anna Crecelius from Jena to Prague
6. Bianca Squillaci from Stevenage to Prague
7. Beata Willeńska from Warsaw To Vienna
8. Piotr Sosnowski from Warsaw to Vienna
9. Beatriz Rocha from La Coruña to Amsterdam
10. Marta Martin Lorenzo from Madrid to Leiden
11. Hermelindis Ruh from Mannheim to Stevenage
12. Maria Laura Dilillo from Pisa to Turku

 

2014
1. Matthew Gentry from Stevenage to Leiden
2. Marija Nisavic from Belgrade to Amsterdam
3. Heather Hulme from Glasgow to Uppsala
4. Anna Wojakowska from Gliwice to Sheffield
5. Shane Ellis from Amsterdam to Muenster
6. Ricardo Carreira from Leiden to Pisa
7. Rita Laires from Lisbon to Sheffield

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